Abstract The porosity of cell walls, as indicated by diffusion of rhodamine B dye, in the wood of Douglas fir, radiata pine, New Zealand red beech and Shining gum was compared under dynamic conditions using fluorescence recovery after photobleaching. The comparative diffusion rate was estimated using the half-life of fluorescence recovery under water-saturated conditions performed on transverse sections. All four wood species showed similar diffusion behaviour in tracheid or fibre cell walls with slower diffusion in the middle lamella layer compared to the secondary cell wall. Within the S 2 layer of the secondary wall two regions were observed, an outer region with a slow diffusion rate and an inner region with a higher diffusion rate. Vessel cell walls showed slightly slower diffusion rates. Diffusion of rhodamine B dye appears to occur primarily along the fibre axis and is probably somewhat different to water in its behaviour. This suggests that pores are aligned with cellulose microfibrils. The dye diffusion rate was estimated to be in the range of 50–100 nm 2 s −1 . This has implications for understanding wood drying behaviour and chemical modification of wood by infiltration with small molecules as well as water storage in living trees.