Plasma metabolic signatures for intracranial aneurysm and its rupture identified by pseudotargeted metabolomics

代谢组学 Lasso(编程语言) 随机森林 小桶 代谢物 代谢途径 接收机工作特性 代谢组 特征选择 医学 新陈代谢 计算生物学 生物信息学 内科学 生物 生物化学 机器学习 计算机科学 基因本体论 基因表达 万维网 基因
作者
Kaijian Sun,Xin Zhang,Xin Li,Xifeng Li,Shixing Su,Yunhao Luo,Hao Tian,Meiqin Zeng,Cheng Wang,Yugu Xie,Nan Zhang,Ying Cao,Zhaohua Zhu,Qianlin Ni,Wenchao Liu,Fangbo Xia,Xuying He,Zunji Shi,Chuanzhi Duan,Haitao Sun
出处
期刊:Clinica Chimica Acta [Elsevier BV]
卷期号:538: 36-45 被引量:22
标识
DOI:10.1016/j.cca.2022.11.002
摘要

The vital metabolic signatures for IA risk stratification and its potential biological underpinnings remain elusive. Our study aimed to develop an early diagnosis model and rupture classification model by analyzing plasma metabolic profiles of IA patients. Plasma samples from a cohort of 105 participants, including 75 IA patients in unruptured and ruptured status (UIA, RIA) and 30 control participants were collected for comprehensive metabolic evaluation using ultra-high-performance liquid chromatography–mass spectrometry-based pseudotargeted metabolomics method. Furthermore, an integrated machine learning strategy based on LASSO, random forest and logistic regression were used for feature selection and model construction. The metabolic profiling disturbed significantly in UIA and RIA patients. Notably, adenosine content was significantly downregulated in UIA, and various glycine-conjugated secondary bile acids were decreased in RIA patients. Enriched KEGG pathways included glutathione metabolism and bile acid metabolism. Two sets of biomarker panels were defined to discriminate IA and its rupture with the area under receiver operating characteristic curve of 0.843 and 0.929 on the validation sets, respectively. The present study could contribute to a better understanding of IA etiopathogenesis and facilitate discovery of new therapeutic targets. The metabolite panels may serve as potential non-invasive diagnostic and risk stratification tool for IA.
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