生物
小桶
WRKY蛋白质结构域
转录组
基因
山茶
MYB公司
从头转录组组装
遗传学
Illumina染料测序
转录因子
基因表达
基因组
计算生物学
植物
作者
Feng Liu,Yu Wang,Zhaotang Ding,Lei Zhao,Jun Xiao,Linjun Wang,Shibo Ding
出处
期刊:Gene
[Elsevier]
日期:2017-10-01
卷期号:631: 39-51
被引量:31
标识
DOI:10.1016/j.gene.2017.08.013
摘要
Flowering is a critical and complicated process in plant development, involving interactions of numerous endogenous and environmental factors, but little is known about the complex network regulating flower development in tea plants. In this study, de novo transcriptome assembly and gene expression analysis using Illumina sequencing technology were performed. Transcriptomic analysis assembles gene-related information involved in reproductive growth of C. sinensis. Gene Ontology (GO) analysis of the annotated unigenes revealed that the majority of sequenced genes were associated with metabolic and cellular processes, cell and cell parts, catalytic activity and binding. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis indicated that metabolic pathways, biosynthesis of secondary metabolites, and plant hormone signal transduction were enriched among the DEGs. Furthermore, 207 flowering-associated unigenes were identified from our database. Some transcription factors, such as WRKY, ERF, bHLH, MYB and MADS-box were shown to be up-regulated in floral transition, which might play the role of progression of flowering. Furthermore, 14 genes were selected for confirmation of expression levels using quantitative real-time PCR (qRT-PCR). The comprehensive transcriptomic analysis presents fundamental information on the genes and pathways which are involved in flower development in C. sinensis. Our data also provided a useful database for further research of tea and other species of plants.
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