[Risk modeling based on HER-2 related genes for bladder cancer survival prognosis assessment].

膀胱癌 列线图 肿瘤科 比例危险模型 接收机工作特性 内科学 生存分析 医学 癌症 生物
作者
Huan Rui Liu,Xiang Peng,Sen Lin Li,Xin Gou
出处
期刊:PubMed 卷期号:55 (5): 793-801
链接
标识
摘要

To investigate the correlation between the human epidermal growth factor receptor-2-related genes (HRGs) and survival prognosis of bladder cancer and to construct a predictive model for survival prognosis of bladder cancer patients based on HRGs.HRGs in bladder cancer were found by downloading bladder tumor tissue mRNA sequencing data and clinical data from the cancer genome atlas (TCGA), downloading HER-2 related genes from the molecular signatures database (MsigDB), and crossing the two databases. Further identifying HRGs associated with bladder cancer survival (P < 0.05) by using single and multi-factor Cox regression analysis and constructing HRGs risk score model (HRSM), the bladder cancer patients were categorized into high-risk and low-risk groups accor-ding to the median risk score. Survival analysis of the patients in high- and low-risk groups was conducted using R language and correlation of HRGs with clinical characteristics. A multi-factor Cox regression analysis was used to verify the independent factors affecting the prognosis of the patients with bladder cancer. The area under the curve (AUC) of the receiver operating characteristic curve (ROC) of HRSM was calculated, and a nomogram was constructed for survival prediction of the bladder cancer patients. Analysis of HRSM and patient immune cell infiltration correlation was made using the TIMER database.A total of 13 HRGs associated with patient survival were identified in this study. Five genes (BTC, CDC37, EGF, PTPRR and EREG) were selected for HRSM by multi-factor Cox regression analysis. The 5-year survival rate of the bladder cancer patients in the high-risk group was significantly lower than that of the patients in the low-risk group. High expression of PTPRR was found to be significantly and negatively correlated with tumor grade and stage by clinical correlation analysis, while EREG was found to be the opposite; Increased expression of EGF was associated with high grade, however, the high expression ofCDC37showed the opposite result. And no significant correlation was found between BTC expression and clinical features. Correlation analysis of HRSM with immune cells revealed a positive correlation between risk score and infiltration of dendritic cells, CD8+T cells, CD4+T cells, neutrophils and macrophages.HRGs have an important role in the prognosis of bladder cancer patients and may serve as new predictive biomarkers and potential targets for treatment.

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
chloe完成签到 ,获得积分10
刚刚
桐桐应助申小萌采纳,获得10
1秒前
星星泡饭完成签到,获得积分10
1秒前
健忘曼云完成签到,获得积分10
1秒前
晶晶妹妹发布了新的文献求助10
1秒前
1秒前
通~发布了新的文献求助10
2秒前
2秒前
xiaohongmao完成签到,获得积分10
2秒前
科研通AI5应助6680668采纳,获得10
3秒前
3秒前
卡卡发布了新的文献求助10
4秒前
5秒前
欢呼鼠标发布了新的文献求助10
5秒前
appearance发布了新的文献求助10
5秒前
奋斗的凡完成签到 ,获得积分10
5秒前
ice完成签到 ,获得积分10
6秒前
junc完成签到,获得积分10
6秒前
小小完成签到,获得积分20
6秒前
8秒前
9秒前
R先生完成签到,获得积分10
9秒前
小土豆完成签到,获得积分10
9秒前
申小萌完成签到,获得积分10
9秒前
饭小心发布了新的文献求助10
9秒前
kevindeng完成签到,获得积分10
10秒前
10秒前
10秒前
肖俊彦发布了新的文献求助10
10秒前
情怀应助星星泡饭采纳,获得10
10秒前
10秒前
11秒前
11秒前
云_123发布了新的文献求助10
12秒前
所所应助德德采纳,获得10
12秒前
衔尾蛇完成签到,获得积分10
12秒前
烟花应助幸福胡萝卜采纳,获得10
13秒前
shi hui应助乐观发卡采纳,获得10
13秒前
特兰克斯完成签到,获得积分20
13秒前
米斯特刘完成签到,获得积分20
14秒前
高分求助中
Continuum Thermodynamics and Material Modelling 3000
Production Logging: Theoretical and Interpretive Elements 2700
Social media impact on athlete mental health: #RealityCheck 1020
Ensartinib (Ensacove) for Non-Small Cell Lung Cancer 1000
Unseen Mendieta: The Unpublished Works of Ana Mendieta 1000
Bacterial collagenases and their clinical applications 800
El viaje de una vida: Memorias de María Lecea 800
热门求助领域 (近24小时)
化学 材料科学 生物 医学 工程类 有机化学 生物化学 物理 纳米技术 计算机科学 内科学 化学工程 复合材料 基因 遗传学 物理化学 催化作用 量子力学 光电子学 冶金
热门帖子
关注 科研通微信公众号,转发送积分 3527742
求助须知:如何正确求助?哪些是违规求助? 3107867
关于积分的说明 9286956
捐赠科研通 2805612
什么是DOI,文献DOI怎么找? 1540026
邀请新用户注册赠送积分活动 716884
科研通“疑难数据库(出版商)”最低求助积分说明 709762