Network pharmacology-based strategy for predicting therapy targets of Sanqi and Huangjing in diabetes mellitus

小桶 系统药理学 中医药 医学 计算生物学 药物数据库 AKT1型 药理学 机制(生物学) 三七 基因 传统医学 生物信息学 药品 基因本体论 生物 基因表达 遗传学 信号转导 PI3K/AKT/mTOR通路 替代医学 哲学 认识论 病理
作者
Xiaoyan Cui,Xiao Wu,Dan Lü,Dan Wang
出处
期刊:World Journal of Clinical Cases [Baishideng Publishing Group Co (World Journal of Clinical Cases)]
卷期号:10 (20): 6900-6914 被引量:3
标识
DOI:10.12998/wjcc.v10.i20.6900
摘要

A comprehensive literature search shows that Sanqi and Huangjing (SQHJ) can improve diabetes treatment in vivo and in vitro, respectively. However, the combined effects of SQHJ on diabetes mellitus (DM) are still unclear.To explore the potential mechanism of Panax notoginseng (Sanqi in Chinese) and Polygonati Rhizoma (Huangjing in Chinese) for the treatment of DM using network pharmacology.The active components of SQHJ and targets were predicted and screened by network pharmacology through oral bioavailability and drug-likeness filtration using the Traditional Chinese Medicine Systems Pharmacology Analysis Platform database. The potential targets for the treatment of DM were identified according to the DisGeNET database. A comparative analysis was performed to investigate the overlapping genes between active component targets and DM treatment-related targets. We constructed networks of the active component-target and target pathways of SQHJ using Cytoscape software and then analyzed the gene functions. Using the STRING database to perform an interaction analysis among overlapping genes and a topological analysis, the interactions between potential targets were identified. Gene Ontology (GO) function analyses and Kyoto Encyclopedia of Genes and Genomes enrichment analyses were conducted in DAVID.We screened 18 active components from 157 SQHJ components, 187 potential targets for active components and 115 overlapping genes for active components and DM. The network pharmacology analysis revealed that quercetin, beta-sitosterol, baicalein, etc. were the major active components. The mechanism underlying the SQHJ intervention effects in DM may involve nine core targets (TP53, AKT1, CASP3, TNF, interleukin-6, PTGS2, MMP9, JUN, and MAPK1). The screening and enrichment analysis revealed that the treatment of DM using SQHJ primarily involved 16 GO enriched terms and 13 related pathways.SQHJ treatment for DM targets TP53, AKT1, CASP3, and TNF and participates in pathways in leishmaniasis and cancer.
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