微生物群
指南
计算机科学
数据科学
领域(数学)
计算生物学
医学
生物信息学
生物
病理
数学
纯数学
作者
Joseph Boctor,Mariam Oweda,Mohamed El-Hadidi
出处
期刊:Methods in molecular biology
日期:2023-01-01
卷期号:: 393-436
被引量:1
标识
DOI:10.1007/978-1-0716-3072-3_20
摘要
The need for a comprehensive consolidated guide for R packages and tools that are used in microbiome data analysis is significant; thus, we aim to provide a detailed step-by-step dissection of the most used R packages and tools in the field of microbiome data integration and analysis. The guideline aims to be a user-friendly simplification and tutorial on five main packages, namely phyloseq, MegaR, DADA2, Metacoder, and microbiomeExplorer due to their high efficiency and benefit in microbiome data analysis.
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