Dataset of barcoded Reticulariaceae: ten years of DNA sequencing

GenBank公司 亚种 植物标本室 DNA条形码 生物 分类单元 生物多样性 进化生物学 地方性 动物 基因 生态学 遗传学
作者
Dmitry V. Leontyev,Iryna Yatsiuk
出处
期刊:Biodiversity Data Journal [Pensoft Publishers]
卷期号:12
标识
DOI:10.3897/bdj.12.e115630
摘要

As a result of the ten years (2012–2022) work under the critical revision of the genera of Reticulariaceae, a set of papers was published. Collection data of hundreds of specimens, used as a material for these studies, were provided as supplements of corresponding papers, but remained unpublished in biodiversity databases. Here, we represent an occurrence dataset "Barcoded Reticulariaceae of the World", published in GBIF. It includes data on 523 myxomycete collections (including 36 types) gathered from five continents and spanning 24 countries. The dataset encompasses 43 distinct species and one subspecies of myxomycetes, including rare, endemic, and recently-described taxa. Species included to the database mainly belong to the genera Alwisia , Lycogala , Reticularia , Siphoptychium , Thecotubifera and Tubifera (Reticulariaceae), but as well Lindbladia and Licaethalium (Cribrariaceae). Nearly all of the research material, with the exception of several old collections, underwent molecular barcoding, primarily involving the 18S rDNA gene, but also the elongation factor 1α gene and mitochondrial cytochrome oxidase subunit I gene. For those sequences that are stored in the NCBI GenBank, accession numbers are provided in the dataset. Newly-described species make up a significant part of the studied herbarium collections; many of them can be characterised as common for their region. A particularly high level of taxonomic novelty is observed in Australia, which may be explained by the endemism of the local myxomycete biota.

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