Agonist activation to open the Gα subunit of the GPCR–G protein precoupled complex defines functional agonist activation of TAS2R5

G蛋白偶联受体 兴奋剂 G蛋白 元动力学 信号转导 受体 化学 生物物理学 功能选择性 配体(生物化学) 内在活性 蛋白质亚单位 生物化学 生物 分子动力学 计算化学 基因
作者
Moon Young Yang,Khuong Duy Mac,Hannah R. Strzelinski,Sandy J. Hoffman,Donghwa Kim,Soo-Kyung Kim,Judith Su,Stephen B. Liggett,William A. Goddard
出处
期刊:Proceedings of the National Academy of Sciences of the United States of America [National Academy of Sciences]
卷期号:121 (48)
标识
DOI:10.1073/pnas.2409987121
摘要

G protein-coupled receptors (GPCRs) regulate multiple cellular responses and represent highly successful therapeutic targets. The mechanisms by which agonists activate the G protein are unclear for many GPCR families, including the bitter taste receptors (TAS2Rs). We ascertained TAS2R5 properties by live cell-based functional assays, direct binding affinity measurements using optical resonators, and atomistic molecular dynamics simulations. We focus on three agonists that exhibit a wide range of signal transduction in cells despite comparable ligand–receptor binding energies derived from direct experiment and computation. Metadynamics simulations revealed that the critical barrier to activation is ligand-induced opening of the G protein between the α-helical (AH) and Ras-like domains of Gα subunit from a precoupled TAS2R5-G protein state to the fully activated state. A moderate agonist opens the AH-Ras cleft from 22 Å to 31 Å with an energy gain of −4.8 kcal mol −1 , making GDP water-exposed for signaling. A high-potency agonist had an energy gain of −11.1 kcal mol −1 . The low-potency agonist is also exothermic for Gα opening, but with an energy gain of only −1.4 kcal mol −1 . This demonstrates that TAS2R5 agonist-bound functional potencies are derived from energy gains in the transition from a precoupled complex at the level of Gα opening. Our experimental and computational study provides insights into the activation mechanism of signal transduction that provide a basis for rational design of new drugs.
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