G蛋白偶联受体
兴奋剂
G蛋白
元动力学
信号转导
受体
化学
生物物理学
功能选择性
配体(生物化学)
内在活性
蛋白质亚单位
生物化学
生物
分子动力学
计算化学
基因
作者
Moon Young Yang,Khuong Duy Mac,Hannah R. Strzelinski,Sandy J. Hoffman,Donghwa Kim,Soo-Kyung Kim,Judith Su,Stephen B. Liggett,William A. Goddard
标识
DOI:10.1073/pnas.2409987121
摘要
G protein-coupled receptors (GPCRs) regulate multiple cellular responses and represent highly successful therapeutic targets. The mechanisms by which agonists activate the G protein are unclear for many GPCR families, including the bitter taste receptors (TAS2Rs). We ascertained TAS2R5 properties by live cell-based functional assays, direct binding affinity measurements using optical resonators, and atomistic molecular dynamics simulations. We focus on three agonists that exhibit a wide range of signal transduction in cells despite comparable ligand–receptor binding energies derived from direct experiment and computation. Metadynamics simulations revealed that the critical barrier to activation is ligand-induced opening of the G protein between the α-helical (AH) and Ras-like domains of Gα subunit from a precoupled TAS2R5-G protein state to the fully activated state. A moderate agonist opens the AH-Ras cleft from 22 Å to 31 Å with an energy gain of −4.8 kcal mol −1 , making GDP water-exposed for signaling. A high-potency agonist had an energy gain of −11.1 kcal mol −1 . The low-potency agonist is also exothermic for Gα opening, but with an energy gain of only −1.4 kcal mol −1 . This demonstrates that TAS2R5 agonist-bound functional potencies are derived from energy gains in the transition from a precoupled complex at the level of Gα opening. Our experimental and computational study provides insights into the activation mechanism of signal transduction that provide a basis for rational design of new drugs.
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