Identification of the polypeptides of the major light‐harvesting complex of photosystem II (LHCII) with their genes in tomato

Using an improved SDS‐PAGE system, the polypeptides of the major chlorophyll a/b light‐harvesting complex of PSII (LHCII) from tomato leaves were resolved into five polypeptide bands. All the polypeptides were matched with the genes encoding them by comparing amino acid sequences of tryptic peptides with gene sequences. The two major LHCII bands (usually comigrating as a ‘27 kDa’ polypeptide) were encoded by cab 1 and cab 3 (Type I LHCII) genes. A third strong band or about 25 kDa was encoded by cab 4 (Type II) genes. Polypeptides from two minor bands of 23–24 kDa were not N‐teminally blocked; their N‐terminal sequences showed they were Type III LHCII proteins. One complete cDNA clone and several incomplete clones for Type III polypeptides were sequenced. Combined with the peptide sequences, the results indicate that there are at least four different Type III genes in tomato, encoding four almost identical polypeptides. Thus, all the LHCII CAB polypeptides have been identified, and each type of LHCII polypeptide is encoded by distinct gene or genes in tomato.