Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool

注释 计算机科学 树(集合论) 元数据 图形用户界面 情报检索 节点(物理) 数据挖掘 人工智能 万维网 程序设计语言 数学 数学分析 结构工程 工程类
作者
Ivica Letunić,Peer Bork
出处
期刊:Nucleic Acids Research [Oxford University Press]
卷期号:52 (W1): W78-W82 被引量:150
标识
DOI:10.1093/nar/gkae268
摘要

The Interactive Tree Of Life (https://itol.embl.de) is an online tool for the management, display, annotation and manipulation of phylogenetic and other trees. It is freely available and open to everyone. iTOL version 6 introduces a modernized and completely rewritten user interface, together with numerous new features. A new dataset type has been introduced (colored/labeled ranges), greatly upgrading the functionality of the previous simple colored range annotation function. Additional annotation options have been implemented for several existing dataset types. Dataset template files now support simple assignment of annotations to multiple tree nodes through substring matching, including full regular expression support. Node metadata handling has been greatly extended with novel display and exporting options, and it can now be edited interactively or bulk updated through annotation files. Tree labels can be displayed using multiple simultaneous font styles, with precise positioning, sizing and styling of each individual label part. Various bulk label editing functions have been implemented, simplifying large scale changes of all tree node labels. iTOL's automatic taxonomy assignment functions now support trees based on the Genome Taxonomy Database (GTDB), in addition to the NCBI taxonomy. The functionality of the optional user account pages has been expanded, simplifying the management, navigation and sharing of projects and trees. iTOL currently handles more than one and a half million trees from >130 000 individual user accounts.

科研通智能强力驱动
Strongly Powered by AbleSci AI
更新
大幅提高文件上传限制,最高150M (2024-4-1)

科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
刚刚
kitey完成签到,获得积分10
5秒前
老姚发布了新的文献求助50
6秒前
6秒前
孤魄前行完成签到,获得积分10
8秒前
ider完成签到 ,获得积分10
9秒前
15秒前
16秒前
oriole13完成签到,获得积分10
16秒前
脑洞疼应助快乐小子采纳,获得10
19秒前
ider关注了科研通微信公众号
20秒前
Carpe发布了新的文献求助10
20秒前
21秒前
23秒前
CAOHOU应助科研通管家采纳,获得10
23秒前
无花果应助科研通管家采纳,获得10
23秒前
在水一方应助科研通管家采纳,获得10
23秒前
无花果应助科研通管家采纳,获得10
23秒前
今后应助科研通管家采纳,获得10
23秒前
充电宝应助科研通管家采纳,获得10
23秒前
Jasper应助科研通管家采纳,获得10
23秒前
24秒前
24秒前
24秒前
敏感的靳应助科研通管家采纳,获得10
24秒前
24秒前
SciGPT应助科研通管家采纳,获得10
24秒前
24秒前
Hello应助科研通管家采纳,获得10
24秒前
24秒前
24秒前
桐桐应助wym采纳,获得10
26秒前
27秒前
28秒前
小赵发布了新的文献求助10
29秒前
29秒前
31秒前
Hello应助wtc采纳,获得10
31秒前
qq完成签到,获得积分10
32秒前
whitepiece完成签到,获得积分10
32秒前
高分求助中
Evolution 2024
中国国际图书贸易总公司40周年纪念文集: 回忆录 2000
Impact of Mitophagy-Related Genes on the Diagnosis and Development of Esophageal Squamous Cell Carcinoma via Single-Cell RNA-seq Analysis and Machine Learning Algorithms 2000
Die Elektra-Partitur von Richard Strauss : ein Lehrbuch für die Technik der dramatischen Komposition 1000
How to Create Beauty: De Lairesse on the Theory and Practice of Making Art 1000
Gerard de Lairesse : an artist between stage and studio 670
Formation of interface waves in dependence of the explosive welding parameters 550
热门求助领域 (近24小时)
化学 医学 生物 材料科学 工程类 有机化学 生物化学 物理 内科学 纳米技术 计算机科学 化学工程 复合材料 基因 遗传学 催化作用 物理化学 免疫学 量子力学 细胞生物学
热门帖子
关注 科研通微信公众号,转发送积分 3003596
求助须知:如何正确求助?哪些是违规求助? 2662846
关于积分的说明 7214987
捐赠科研通 2298819
什么是DOI,文献DOI怎么找? 1219205
科研通“疑难数据库(出版商)”最低求助积分说明 594396
版权声明 593089