Regression and alignment for functional data and network topology

可解释性 计算机科学 连接体 模块化(生物学) 网络拓扑 回归 网络分析 人工智能 机器学习 数据挖掘 拓扑(电路) 数学 统计 遗传学 神经科学 功能连接 生物 操作系统 物理 量子力学 组合数学
作者
Danni Tu,Julia Wrobel,Haochang Shou,Jeff Goldsmith,Ruben C. Gur,Raquel E. Gur,Jan Gertheiss,Danielle S. Bassett,Russell T. Shinohara
出处
期刊:Biostatistics [Oxford University Press]
标识
DOI:10.1093/biostatistics/kxae026
摘要

Abstract In the brain, functional connections form a network whose topological organization can be described by graph-theoretic network diagnostics. These include characterizations of the community structure, such as modularity and participation coefficient, which have been shown to change over the course of childhood and adolescence. To investigate if such changes in the functional network are associated with changes in cognitive performance during development, network studies often rely on an arbitrary choice of preprocessing parameters, in particular the proportional threshold of network edges. Because the choice of parameter can impact the value of the network diagnostic, and therefore downstream conclusions, we propose to circumvent that choice by conceptualizing the network diagnostic as a function of the parameter. As opposed to a single value, a network diagnostic curve describes the connectome topology at multiple scales—from the sparsest group of the strongest edges to the entire edge set. To relate these curves to executive function and other covariates, we use scalar-on-function regression, which is more flexible than previous functional data-based models used in network neuroscience. We then consider how systematic differences between networks can manifest in misalignment of diagnostic curves, and consequently propose a supervised curve alignment method that incorporates auxiliary information from other variables. Our algorithm performs both functional regression and alignment via an iterative, penalized, and nonlinear likelihood optimization. The illustrated method has the potential to improve the interpretability and generalizability of neuroscience studies where the goal is to study heterogeneity among a mixture of function- and scalar-valued measures.

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