Exogenous 6‐benzyladenine application affects root morphology by altering hormone status and gene expression of developing lateral roots in Malus hupehensis

Abstract Malus hupehensis is an extensively used apple rootstock in China. In the current study, M. hupehensis seedlings were treated with exogenous 2.2 µ m 6‐benzyladenine (6‐BA) so as to investigate the mechanism by which 6‐BA affects lateral root development. The results indicate that 6‐BA treatment promotes elongation and thickening of both root and shoot in M. hupehensis , but reduces the number of lateral roots, as well as reducing the auxin level after 6‐BA treatment. Moreover, MhAHK4 , MhRR1 and MhRR2 were also significantly up‐regulated in response to 6‐BA treatment. Expression levels of auxin synthesis‐ and transport‐related genes, such as MhYUCCA6 , MhYUCCA10 , MhPIN1 and MhPIN2 , were down‐regulated, which corresponds with lower auxin levels in the 6‐BA‐treated seedlings. A negative regulator of auxin, MhIAA3 , was induced by 6‐BA treatment, leading to reduced expression of MhARF7 and MhARF19 in 6‐BA‐treated seedlings. As a result, expression of MhWOX11 , MhWOX5 , MhLBD16 and MhLBD29 was blocked, which in turn inhibited lateral root initiation. In addition, a lower auxin level decreased expression of MhRR7 and MhRR15 , which repressed expression of key transcription factors associated with root development, thus inhibiting lateral root development. In contrast, 6‐BA treatment promoted secondary growth (thickening) of the root by inducing expression of MhCYCD3;1 and MhCYCD3;2 . Collectively, the changes in hormone levels and gene expression resulted in a reduced number of lateral roots and thicker roots in 6‐BA‐treated plants.