晶体结构预测
分子
化学
Crystal(编程语言)
位阻效应
晶体结构
空格(标点符号)
构象异构
群(周期表)
功能(生物学)
对称(几何)
化学空间
结晶学
算法
计算化学
统计物理学
化学物理
计算机科学
物理
立体化学
数学
几何学
有机化学
生物化学
进化生物学
生物
程序设计语言
药物发现
操作系统
作者
Detlef W. M. Hofmann,Thomas Lengauer
标识
DOI:10.1016/s0022-2860(98)00556-0
摘要
We have developed a new algorithm for crystal structure prediction that takes a conformer of an organic molecule and produces a number of candidates of crystal structures for this molecule, together with a score that roughly approximates the energy of the respective crystal structure. The prediction method takes steric aspects (dense packing) as well as chemical interactions into account. The algorithm differs from existing methods in three aspects. First, we analyse a single molecule rather than a collection of identical molecules. The analysis yields candidates for symmetry operations that are suitable for making the crystal. Each of the candidates is generated by a chemical interaction between two versions of the molecule. Second, we model space discretely, currently as a mesh with size 1 Å. Third, the scoring function representing energy is derived statistically from known crystal structures and tabulated. Our program FlexCryst computes a list of crystal structures ranked according to our scoring function. The new algorithm is currently implemented for the four space groups P1, P1̄, P21, and P212121. The three latter space groups are widespread in nature. The algorithm computes structural models of acceptable quality and shows excellent time performance.
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