An improved multi-objective marine predator algorithm for gene selection in classification of cancer microarray data

初始化 计算机科学 特征选择 多目标优化 选择(遗传算法) 进化算法 人口 帕累托原理 算法 支持向量机 维数(图论) 数据挖掘 人工智能 机器学习 数学优化 数学 社会学 人口学 程序设计语言 纯数学
作者
Qiyong Fu,Qi Li,Xiaobo Li
出处
期刊:Computers in Biology and Medicine [Elsevier BV]
卷期号:160: 107020-107020 被引量:12
标识
DOI:10.1016/j.compbiomed.2023.107020
摘要

Gene selection (GS) is an important branch of interest within the field of feature selection, which is widely used in cancer classification. It provides essential insights into the pathogenesis of cancer and enables a deeper understanding of cancer data. In cancer classification, GS is essentially a multi-objective optimization problem, which aims to simultaneously optimize the two objectives of classification accuracy and the size of the gene subset. The marine predator algorithm (MPA) has been successfully employed in practical applications, however, its random initialization can lead to blindness, which may adversely affect the convergence of the algorithm. Furthermore, the elite individuals in guiding evolution are randomly chosen from the Pareto solutions, which may degrade the good exploration performance of the population. To overcome these limitations, a multi-objective improved MPA with continuous mapping initialization and leader selection strategies is proposed. In this work, a new continuous mapping initialization with ReliefF overwhelms the defects with less information in late evolution. Moreover, an improved elite selection mechanism with Gaussian distribution guides the population to evolve towards a better Pareto front. Finally, an efficient mutation method is adopted to prevent evolutionary stagnation. To evaluate its effectiveness, the proposed algorithm was compared with 9 famous algorithms. The experimental results on 16 datasets demonstrate that the proposed algorithm can significantly reduce the data dimension and obtain the highest classification accuracy on most of high-dimension cancer microarray datasets.

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