A Vision Based Method for Automatic Evaluation of Germination Rate of Rice Seeds

Rice is one of the most cultivated cereal in Asian countries and Vietnam in particular. Good seed germination is important for rice seed quality, that impacts the rice production and crop yield. Currently, seed germination evaluation is carried out manually by experienced persons. This is a tedious and time-consuming task. In this paper, we present a system for automatic evaluation of rice seed germination rate based on advanced techniques in computer vision and machine learning. We propose to use U-Net - a convolutional neural network - for segmentation and separation of rice seeds. Further processing such as computing distance transform and thresholding will be applied on the segmented regions for rice seed detection. Finally, ResNet is utilized to classify segmented rice seed regions into two classes: germinated and non- germinated seeds. Our contributions in this paper are three-fold. Firstly, we propose a framework which confirms that convolutional neural networks are better than traditional methods for both segmentation and classification tasks (with F1- scores of 93.38\% and 95.66\% respectively). Secondly, we deploy successfully the automatic tool in a real application for estimating rice germination rate. Finally, we introduce a new dataset of 1276 images of rice seeds from 7 to 8 seed varieties germinated during 6 to 10 days. This dataset is publicly available for research purpose.