Python(编程语言)
一套
计算机科学
开源
分子动力学
计算科学
钥匙(锁)
离子键合
离子
程序设计语言
计算化学
化学
软件
操作系统
考古
有机化学
历史
作者
Michael T. Humbert,Yong Zhang,Edward J. Maginn
标识
DOI:10.1021/acs.jcim.9b00066
摘要
Reproducibility and accuracy have become increasingly important issues for the molecular simulation community. The availability of validated open-source postprocessing tools to analyze simulation trajectories and compute properties is key to helping researchers conduct more accurate and reproducible simulations. Here we describe a suite of open-source Python-based postprocessing routines we have developed called PyLAT. PyLAT is compatible with the popular molecular dynamics package LAMMPS and enables users to compute viscosities, self-diffusivities, ionic conductivities, molecule or ion pair lifetimes, dielectric constants, and radial distribution functions using best-practice methods.
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