生物
DNA测序
计算生物学
底漆(化妆品)
微生物群
选择(遗传算法)
焦测序
遗传学
人体微生物群
基因
计算机科学
人工智能
有机化学
化学
作者
Crispin Wiesmann,Konrad Lehr,Juozas Kupcinskas,Ramiro Vilchez-Vargas,Alexander Link
标识
DOI:10.1080/19490976.2022.2110638
摘要
Microbiota research has received an increasing attention for its role in disease development and fungi are considered as one of the key players in the microbial niche. Various sequencing approaches have been applied to uncover the role of fungal community in health and disease; however, little is known on the performance of various primers and comparability between the studies. Motivated by the recent publications, we performed a systematic comparison of the 18S and ITS regions to identify the impact of various primers on the sequencing results. Using four pairs of primers extensively used in literature, fungal community was retrieve from 25 fecal samples, and applying high throughput sequencing; and the results were compared in order to select the most suitable primers for fungal detection in human fecal samples. Considering the high variability between samples, primers described in the Earth microbiome project detected the broadest fungal spectrum suggesting its superior performance in mycobiome research.
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