Abstract Conventional nucleic acid detection methods often involve complex, time‐consuming amplification procedures and rely on sophisticated equipment, rendering them incapable of serving end customers or community hospitals. Here, a miniaturized and automated point‐of‐care (POC) molecular diagnostic device is described that amplification‐free detects, via organic electrochemical transistors (OECTs) enhanced CRISPR/Cas12a system, achieving disease‐associated nucleic acids in real sample at attomolar level within 55 min. The device enables automated sample‐to‐answer analysis via the structural integration of a microfluidic control system, microfluidic chip, and wireless transmission module. Moreover, the device can rapidly distinguish severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) positive and negative patients with an accuracy of 97.4% using 13 pharyngeal swab samples. Besides, it is also shown that the device can detect various nucleic acid including in Staphylococcus aureus ( S. aureu s) and tumor cell by merely redesigning the gRNA regions of the CRISPR/Cas12a. Overall, this work provides an automated and customizable POC device that may facilitate diseases digital surveillance.