Metagenomic insights into the dynamic degradation of brown algal polysaccharides by kelp-associated microbiota

生物 浮霉菌门 拟杆菌 疣状疣 褐藻糖胶 基因组 γ蛋白杆菌 蛋白质细菌 α蛋白细菌 指海带 褐藻 海带 植物 多糖 生态学 藻类 细菌 16S核糖体RNA 生物化学 基因 遗传学
作者
Yi-Shuo Zhang,Yuqi Zhang,Xiang-Ming Zhao,Xiaolei Liu,Qi‐Long Qin,Ning-Hua Liu,Fei Xu,Xiu‐Lan Chen,Yu‐Zhong Zhang,Ping‐Yi Li
出处
期刊:Applied and Environmental Microbiology [American Society for Microbiology]
卷期号:90 (2) 被引量:6
标识
DOI:10.1128/aem.02025-23
摘要

ABSTRACT Marine bacteria play important roles in the degradation and cycling of algal polysaccharides. However, the dynamics of epiphytic bacterial communities and their roles in algal polysaccharide degradation during kelp decay are still unclear. Here, we performed metagenomic analyses to investigate the identities and predicted metabolic abilities of epiphytic bacterial communities during the early and late decay stages of the kelp Saccharina japonica . During kelp decay, the dominant epiphytic bacterial communities shifted from Gammaproteobacteria to Verrucomicrobia and Bacteroidetes. In the early decay stage of S. japonica , epiphytic bacteria primarily targeted kelp-derived labile alginate for degradation, among which the gammaproteobacterial Vibrionaceae (particularly Vibrio ) and Psychromonadaceae (particularly Psychromonas ), abundant in alginate lyases belonging to the polysaccharide lyase (PL) families PL6, PL7, and PL17, were key alginate degraders. More complex fucoidan was preferred to be degraded in the late decay stage of S. japonica by epiphytic bacteria, predominantly from Verrucomicrobia (particularly Lentimonas ), Pirellulaceae of Planctomycetes (particularly Rhodopirellula ), Pontiellaceae of Kiritimatiellota, and Flavobacteriaceae of Bacteroidetes, which depended on using glycoside hydrolases (GHs) from the GH29, GH95, and GH141 families and sulfatases from the S1_15, S1_16, S1_17, and S1_25 families to depolymerize fucoidan. The pathways for algal polysaccharide degradation in dominant epiphytic bacterial groups were reconstructed based on analyses of metagenome-assembled genomes. This study sheds light on the roles of different epiphytic bacteria in the degradation of brown algal polysaccharides. IMPORTANCE Kelps are important primary producers in coastal marine ecosystems. Polysaccharides, as major components of brown algal biomass, constitute a large fraction of organic carbon in the ocean. However, knowledge of the identities and pathways of epiphytic bacteria involved in the degradation process of brown algal polysaccharides during kelp decay is still elusive. Here, based on metagenomic analyses, the succession of epiphytic bacterial communities and their metabolic potential were investigated during the early and late decay stages of Saccharina japonica . Our study revealed a transition in algal polysaccharide-degrading bacteria during kelp decay, shifting from alginate-degrading Gammaproteobacteria to fucoidan-degrading Verrucomicrobia, Planctomycetes, Kiritimatiellota, and Bacteroidetes. A model for the dynamic degradation of algal cell wall polysaccharides, a complex organic carbon, by epiphytic microbiota during kelp decay was proposed. This study deepens our understanding of the role of epiphytic bacteria in marine algal carbon cycling as well as pathogen control in algal culture.
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