Faunimonas pinastri gen. nov., sp. nov., an endophyte from a pine tree of the family Pleomorphomonadaceae, class Alphaproteobacteria

生物 系统发育树 α蛋白细菌 16S核糖体RNA 基因组大小 康蒂格 基因组 全基因组测序 核糖体RNA 系统发育学 遗传学 植物 基因
作者
Diogo Neves Proença,William B. Whitman,Nicole Shapiro,Tanja Woyke,Nikos C. Kyrpides,Paula V. Morais
出处
期刊:International Journal of Systematic and Evolutionary Microbiology [Microbiology Society]
卷期号:72 (12) 被引量:2
标识
DOI:10.1099/ijsem.0.005623
摘要

Bacterial strain A52C2 T was isolated from the endophytic microbial community of a Pinus pinaster tree trunk and characterized. Strain A52C2 T stained Gram-negative and formed rod-shaped cells that grew optimally at 30 °C and at pH 6.0–7.0. The G+C content of the DNA was 65.1 mol %. The respiratory quinone was ubiquinone 10, and the major fatty acids were cyclo-C 19:0 ω 8 c and C 18:0 , representing 70.1 % of the total fatty acids. Phylogenetic analyses based on the 16S rRNA gene sequences placed strain A52C2 T in a distinct lineage within the order Hyphomicrobiales , family Pleomorphomonadaceae . The 16S rRNA gene sequence similarities of A52C2 T to that of Mongoliimonas terrestris and Oharaeibacter diazotrophicus were 93.15 and 93.2 %, respectively. The draft genome sequence of strain A52C2 T comprises 4 196 045 bases with a 195-fold mapped coverage of the genome. The assembled genome consists of 43 contigs of more than 1 000 bp ( N50 contig size was 209 720 bp). The genome encodes 4033 putative coding sequences. The phylogenetic, phenotypic and chemotaxonomic data showed that strain A52C2 T (=UCCCB 130 T =CECT 8949 T =LMG 29042 T ) represents the type of a novel species and genus, for which we propose the name Faunimonas pinastri gen. nov., sp. nov.

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