Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk

现象 全基因组关联研究 生物 慢性阻塞性肺病 遗传关联 基因 疾病 遗传学 肺功能 基因组 生物信息学 计算生物学 单核苷酸多态性 医学 基因型 内科学
作者
Nick Shrine,Abril G. Izquierdo,Jing Chen,Richard Packer,Robert J. Hall,Anna L. Guyatt,Chiara Batini,Rebecca Thompson,Chandan Pavuluri,Vidhi Malik,Brian D. Hobbs,Matthew Moll,Wonji Kim,Ruth Tal‐Singer,Per Bakke,Katherine A. Fawcett,Catherine John,Kayesha Coley,Noemi Nicole Piga,Alfred Pozarickij,Kuang Lin,Iona Y. Millwood,Zhengming Chen,Liming Li,Sara Wijnant,Lies Lahousse,Guy Brusselle,André G. Uitterlinden,Ani Manichaikul,Elizabeth C. Oelsner,Stephen S. Rich,R. Graham Barr,Shona M. Kerr,Véronique Vitart,M. R. W. Brown,Matthias Wielscher,Medea Imboden,Ayoung Jeong,Traci M. Bartz,Sina A. Gharib,Claudia Flexeder,Stefan Karrasch,Christian Gieger,Annette Peters,Beate Stubbe,Xiaowei Hu,Victor E. Ortega,Deborah A. Meyers,Eugene R. Bleecker,Stacey Gabriel,Namrata Gupta,Albert V. Smith,Jian’an Luan,Jinghua Zhao,Ailin Falkmo Hansen,Arnulf Langhammer,Cristen J. Willer,Laxmi Bhatta,David J. Porteous,Blair H. Smith,Archie Campbell,Tamar Sofer,Jiwon Lee,Martha L. Daviglus,Bing Yu,Elise Lim,Hanfei Xu,George O'connor,Gaurav Thareja,Omar Albagha,Said I. Ismail,Wadha Al‐Muftah,Radja Badji,Hamdi Mbarek,Dima Darwish,Tasnim Fadl,Heba Yasin,Maryem Ennaifar,Rania Abdellatif,Fatima Alkuwari,Muhammad Arshad Alvi,Yasser Al‐Sarraj,Chadi Saad,Asmaa Althani,Eleni Fethnou,Fatima Qafoud,Eiman Alkhayat,Nahla Afifi,Sara Tomei,Wei Liu,Stephan Lorenz,Najeeb Syed,Hakeem Almabrazi,Fazulur Rehaman Vempalli,Ramzi Temanni,Tariq Abu Saqri,Mohammedhusen Khatib,Mehshad Hamza,Tariq Abu Zaid,Ahmed El Khouly,Tushar Pathare,Shafeeq Poolat,Rashid Al‐Ali,Souhaila Al‐Khodor,Mashael Al-Shafai,Ramin Badii,Lotfi Chouchane,Xavier Estivill,Khalid A. Fakhro,Younes Mokrab,Jithesh V. Puthen,Zohreh Tatari,Karsten Suhre,Raquel Granell,Tariq Faquih,Pieter S. Hiemstra,Annelies M. Slats,Benjamin H. Mullin,Jennie Hui,Alan James,John Beilby,Karina Patasova,Pirro G. Hysi,Jukka Koskela,Annah B. Wyss,Jianping Jin,Sinjini Sikdar,Mi Kyeong Lee,Sebastian May-Wilson,Nicola Pirastu,Katherine A. Kentistou,Peter K. Joshi,Paul R. H. J. Timmers,Alexander T. Williams,Robert C. Free,Xueyang Wang,John L. Morrison,Frank D. Gilliland,Zhanghua Chen,Carol A. Wang,Rachel E. Foong,Sarah E. Harris,Adele M. Taylor,Paul Redmond,James Cook,Anubha Mahajan,Lars Lind,Teemu Palviainen,Terho Lehtimäki,Olli T. Raitakari,Jaakko Kaprio,Taina Rantanen,Kirsi H. Pietiläinen,Simon R. Cox,Craig E. Pennell,Graham Hall,W. James Gauderman,Chris Brightling,James F. Wilson,Tuula Vasankari,Tarja Laitinen,Veikko Salomaa,Dennis O. Mook‐Kanamori,Nicholas J. Timpson,Eleftheria Zeggini,Josée Dupuis,Caroline Hayward,Ben Brumpton,Claudia Langenberg,Stefan Weiß,Georg Homuth,Carsten Oliver Schmidt,Nicole Probst‐Hensch,Marjo‐Riitta Järvelin,Alanna C. Morrison,Ozren Polašek,Igor Rudan,Joo Hyeon Lee,Ian Sayers,Emma L. Rawlins,Frank Dudbridge,Edwin K. Silverman,David P. Strachan,Robin G. Walters,Andrew P. Morris,Stephanie J. London,Michael H. Cho,Louise V. Wain,Ian P. Hall,Martin D. Tobin
出处
期刊:Nature Genetics [Springer Nature]
卷期号:55 (3): 410-422 被引量:32
标识
DOI:10.1038/s41588-023-01314-0
摘要

Abstract Lung-function impairment underlies chronic obstructive pulmonary disease (COPD) and predicts mortality. In the largest multi-ancestry genome-wide association meta-analysis of lung function to date, comprising 588,452 participants, we identified 1,020 independent association signals implicating 559 genes supported by ≥2 criteria from a systematic variant-to-gene mapping framework. These genes were enriched in 29 pathways. Individual variants showed heterogeneity across ancestries, age and smoking groups, and collectively as a genetic risk score showed strong association with COPD across ancestry groups. We undertook phenome-wide association studies for selected associated variants as well as trait and pathway-specific genetic risk scores to infer possible consequences of intervening in pathways underlying lung function. We highlight new putative causal variants, genes, proteins and pathways, including those targeted by existing drugs. These findings bring us closer to understanding the mechanisms underlying lung function and COPD, and should inform functional genomics experiments and potentially future COPD therapies.
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