生物
管家基因
16S核糖体RNA
系统发育树
小虾
微生物学
弧菌
拉伤
基因
克莱德
核糖体RNA
遗传学
序列分析
基因组
对虾
全基因组测序
系统发育学
基因组DNA
细菌
生态学
基因表达
解剖
作者
Julissa Enciso-Ibarra,Ana Roque,Carmen Bolán-Mejía,Karen Enciso-Ibarra,Adrián González-Castillo,Bruno Gómez‐Gil
标识
DOI:10.1099/ijsem.0.005866
摘要
A novel Vibrio strain (CAIM 722 T =SW9 T =DSM 24596 T ) was isolated in 2003 from water of a shrimp ( Penaeus vannamei ) culture pond located in Los Mochis, Sinaloa, Mexico, and taxonomically characterized using a polyphasic approach. The 16S rRNA gene sequence clustered within those of the genus Vibrio , showing high similarity to the type strains of the Porteresiae clade. Multilocus sequence analysis using eight housekeeping genes ( ftsZ , gapA , gyrB , mreB , pyrH , recA , rpoA , topA and 16S rRNA) and phylogenetic analysis with 139 single-copy genes showed that the strain forms an independent branch. Whole genome sequencing and genomic analyses (average nucleotide identity, OrthoANI, average amino acid identity and in silico DNA–DNA hybridization) produced values well below the thresholds for species delineation with all methods tested. In addition, a phenotypic characterization was performed to support the description and differentiation of the novel strain from related taxa. The results obtained demonstrate that the strain represent a novel species, for which the name Vibrio eleionomae sp. nov. is proposed.
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