Zn‐MnO2 batteries with two‐electron transfer harvest high energy density, high working voltage, inherent safety, and cost‐effectiveness. Zn2+ as the dominant charge carriers suffer from sluggish kinetics due to the strong Zn2+‐MnO2 coulombic interaction, which is also the origin of pestilent MnO2 lattice deformation and performance degradation. Current studies particularly involve H+ insertion‐dominating chemistry, where the long‐term cycle stability remains challenging due to the accumulative Zn2+ insertion and structural collapse. Herein, a simultaneously enhanced and stabilized Zn2+/H+ co‐insertion chemistry is proposed by the quinone‐hybridized MnO2 superlattice, a first‐of‐this‐kind structure with a distinctive organic‐inorganic‐extended p‐π‐d conjugation, which enables a tunable interlayer d‐π hybridization. Theoretical and experimental results substantiate that the interlayer d‐π hybridization triggers the enhancement of polarons occupancy near Fermi level, the downward shift of O p‐band center, the elevated Mn t2g occupation and thus improved [MnO6] stability upon unprecedentedly high Zn2+ contribution. The notable d‐π hybridization endows MnO2 superlattice an ultrahigh specific capacity (435.9 mAh g−1 at 0.25 A g−1), state‐of‐the‐art cycle stability (~100% capacity retention after 30,000 cycles at 10 A g−1) with substantially enhanced rate performance. Our findings enlighten a new paradigm in the adjustment of Zn2+/H+ co‐insertion chemistry towards high‐performance rechargeable aqueous batteries.