生物
16S核糖体RNA
微生物学
系统发育树
肽聚糖
细菌
二氨基酸
基因
遗传学
基因序列
作者
Lu Bai,Jayoung Paek,Yeseul Shin,Hongik Kim,Si Hyun Kim,Jeong Hwan Shin,Joong‐Ki Kook,Young-Hyo Chang
标识
DOI:10.1099/ijsem.0.006284
摘要
Two cocci-shaped, facultatively anaerobic, Gram-positive bacteria isolated from the faeces of a pig were designated as strains YH-aer221 T and YH-aer222. Analysis of the 16S rRNA gene sequences revealed that the isolates were most closely related to Aerococcus suis JCM 18035 T with 96.6 % similarity. The multi-locus sequence tree revealed that the isolates formed a sub-cluster adjacent to A. suis JCM 18035 T . The average nucleotide identity values for the isolates and their most closely related strains were 71.8 and 71.7 %, respectively; and the digital DNA–DNA hybridization values for the isolates and their most closely related strains were 25.6 and 25.5 %, respectively. The main fatty acids were C 18 : 1 ω9 c , C 16 : 0 and C 18 : 0 . The cell wall contained the meso -diaminopimelic acid-based peptidoglycan. The two isolates shared the same metabolic pathways. Isolates YH-aer221 T and YH-aer222 harboured the same CRISPR array with 33 and 46 spacers, respectively. Single-genome vs. metagenome analysis showed that the genomes of the isolates were not found in the available metagenome database. Given their chemotaxonomic, phenotypic and phylogenetic properties, YH-aer221 T (= KCTC 25571 T =JCM 35699 T ) and YH-aer222 (=KCTC 25573=JCM 35700) represent a novel taxon. The name Aerococcus kribbianus sp. nov. is proposed.
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