Integrating Metabolomic Analysis, Network Pharmacology, and Molecular Docking to Underlying Pharmacological Mechanism and Ethnobotanical Rationalization for Diabetes Mellitus: Study on Medicinal Plant Fibraurea tinctoria Lour.

化学 计算生物学 系统药理学 轨道轨道 代谢组学 对接(动物) 李宾斯基五定律 传统医学 代谢途径 药理学 生物化学 质谱法 生物 药品 基因 生物信息学 色谱法 医学 护理部
作者
Abdul Halim Umar,Septina Asih Widuri,Yohana Caecilia Sulistyaningsih,Diah Ratnadewi
出处
期刊:Phytochemical Analysis [Wiley]
标识
DOI:10.1002/pca.3477
摘要

ABSTRACT Introduction Fibraurea tinctoria Lour. has long been used in traditional medicine to treat diabetes mellitus (DM). However, a comprehensive scientific understanding of its potential active compounds and underlying pharmacological mechanisms still needs to be unveiled. Objective This study, therefore, presents a novel approach by integrating metabolomic profiling, pharmacological network, and molecular docking analysis to investigate the potential of F. tinctoria as antidiabetes mellitus. Methods Active compounds were obtained through analysis using ultrahigh‐performance liquid chromatography‐quadrupole‐orbital ion trap‐high resolution mass spectrometry (UHPLC‐Q‐Orbitrap HRMS) and screening of active compounds using Lipinski rule of five and ADMET parameters. Potential targets of F. tinctoria compounds and DM‐related targets were retrieved from public databases, such as DisGeNET, GeneCards, OMIM, PharmaGKB, and TTD. The targets' gene ontology (GO) was created using DAVID and protein–protein interactions using STRING. The plant–organ–compound–target–disease network was constructed using Cytoscape. Then, molecular docking analysis predicted and verified the interactions of essential bioactive compounds of F. tinctoria and DM core targets. Results The network pharmacology approach identified 35 active compounds, 565 compound‐related targets, and 17,289 DM‐related targets. EGFR, HSP90AA1, ESR1, HSP90AB1, and GSK3B were the core targets, whereas isolariciresinol, cubebin, corypalmine, (−)‐8‐oxocanadine, and (+)‐N‐methylcoclaurine were the most active compounds of F. tinctoria with DM potential. GO functional enrichment analysis revealed 483 biological processes, 485 cellular components, and 463 molecular functions. REACTOME pathway enrichment analysis yielded 463 significantly enriched signaling pathways. Of these pathways, the cytokine signaling in the immune system pathway may play a key role in treating DM. The results of molecular docking analysis showed that the core targets of DM, such as 5gnk, 3o0i, 6psj, 5ucj, and 1q5k, bind stably to the analyzed bioactive compounds of F. tinctoria . Conclusions This study provides significant insights into the potential mechanism of F. tinctoria in treating DM. The main active compounds of F. tinctoria were found to interact with the core targets (EGFR, HSP90AA1, ESR1, HSP90AB1, and GSK3B) through the cytokine signaling pathway in the immune system, suggesting a potential therapeutic pathway for DM. However, it is essential to note that these findings are preliminary, and further research is necessary to validate them. Those research studies could involve in vitro and in vivo studies to confirm the bioactivity of the identified compounds and their interactions with the core targets. When the findings are confirmed, they could have significant clinical implications, potentially leading to developing new therapeutic strategies for DM.
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
更新
大幅提高文件上传限制,最高150M (2024-4-1)

科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
白小泽完成签到,获得积分10
3秒前
3秒前
3秒前
丸太子发布了新的文献求助10
4秒前
5秒前
123发布了新的文献求助30
8秒前
Phd侯发布了新的文献求助30
9秒前
科研通AI2S应助科学家采纳,获得10
11秒前
Owen应助静心采纳,获得10
11秒前
11秒前
12秒前
13秒前
搜集达人应助丸太子采纳,获得10
13秒前
YBY完成签到 ,获得积分10
15秒前
赵怡宁发布了新的文献求助10
17秒前
XXXten完成签到 ,获得积分10
18秒前
田様应助犹豫山河采纳,获得10
18秒前
徐rl完成签到 ,获得积分10
19秒前
冷酷芝完成签到,获得积分10
19秒前
Phd侯完成签到,获得积分20
21秒前
英姑应助lkx采纳,获得10
21秒前
CodeCraft应助耍酷的宛秋采纳,获得10
21秒前
22秒前
Yohann完成签到 ,获得积分10
23秒前
万能图书馆应助qlwko采纳,获得10
25秒前
天天玩完成签到,获得积分10
27秒前
慢歌完成签到 ,获得积分10
27秒前
emergency完成签到,获得积分10
29秒前
犹豫山河发布了新的文献求助10
30秒前
30秒前
35秒前
35秒前
lkx发布了新的文献求助10
35秒前
37秒前
37秒前
烟花应助kcul采纳,获得10
37秒前
踏实凡梦完成签到 ,获得积分10
38秒前
77发布了新的文献求助10
39秒前
互助遵法尚德应助十公里采纳,获得10
40秒前
dmr完成签到,获得积分10
40秒前
高分求助中
Evolution 10000
Sustainability in Tides Chemistry 2800
юрские динозавры восточного забайкалья 800
English Wealden Fossils 700
An Introduction to Geographical and Urban Economics: A Spiky World Book by Charles van Marrewijk, Harry Garretsen, and Steven Brakman 600
Diagnostic immunohistochemistry : theranostic and genomic applications 6th Edition 500
Chen Hansheng: China’s Last Romantic Revolutionary 500
热门求助领域 (近24小时)
化学 医学 生物 材料科学 工程类 有机化学 生物化学 物理 内科学 纳米技术 计算机科学 化学工程 复合材料 基因 遗传学 催化作用 物理化学 免疫学 量子力学 细胞生物学
热门帖子
关注 科研通微信公众号,转发送积分 3151938
求助须知:如何正确求助?哪些是违规求助? 2803228
关于积分的说明 7852661
捐赠科研通 2460630
什么是DOI,文献DOI怎么找? 1309955
科研通“疑难数据库(出版商)”最低求助积分说明 629087
版权声明 601760